PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498778.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ERF
Protein Properties Length: 169aa    MW: 19069.6 Da    PI: 8.1053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18754253
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                    +++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ +
  XP_004498778.1  7 RFRGVRQRH-WGSWVSEIRHP-----IlkTRIWLGTFETAEDAARAYDEAARLM 54
                    69******9.**********8.....556*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.64E-35664No hitNo description
Gene3DG3DSA:3.30.730.103.9E-33765IPR001471AP2/ERF domain
PfamPF008472.3E-11756IPR001471AP2/ERF domain
SMARTSM003804.2E-40770IPR001471AP2/ERF domain
PROSITE profilePS5103220.508764IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-20765IPR016177DNA-binding domain
PRINTSPR003678.4E-11819IPR001471AP2/ERF domain
PRINTSPR003678.4E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MARPQQRFRG VRQRHWGSWV SEIRHPILKT RIWLGTFETA EDAARAYDEA ARLMCGSRTR  60
TNFPLNSNVS SSKILSPTLT AKLHRCYVAS LQLTRKMLVV PPPTQNVMIS TTTSTNGKAL  120
ENGNSHELFK ALEEDDHQIE QMIEELLDYG SIELCSATHN TQESAGQTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A8e-19868667ATERF1
2gcc_A8e-19868667ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498778.11e-126PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW59e-66ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0M3SU383e-71A0A0M3SU38_9R
TrEMBLM5XSZ73e-71M5XSZ7_PRUPE; Uncharacterized protein
STRINGGLYMA17G33075.12e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-55ERF family protein